species:   Rhsol
pid:       PID0501
parent:    Rhi-milR-165
paralog:   
locus:     KB317709.1:12899-12970
matures:   ['UUGGCAGGGUUUGGAUGUGUAUC', 'AACACCUCCUCCAUUGCCUUUU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317709.1:12899-12970

5 out of bounds
62 alignments
10 proper strand
8 stranded perfect matches

       *************************     **************************         
CAUUGGGGGAAACACCUCCUCCAUUGCCUUUUCUUCCUAUUGGCAGGGUUUGGAUGUGUAUCUUAUGCAAAG
......((((.((((.(((.((.(((((.............)))))))...))).)))).))))........
---------------------------------------UUGGCAGGGUUUGGAUGUGUAUC---------- l=23 a=0 c
----------AACACCUCCUCCAUUGCCUUUU---------------------------------------- l=22 a=0 c*
---------------------------------------UUGGCAGGGUUUGGAUGUGUAUCU--------- l=24 a=5 ma
---------AAACACCUCCUCCAUUGCCUUUU---------------------------------------- l=23 a=0 ma*

-------------------------------------UAUUGGCAGGGUUUGGAUGUGU------------- l=22 a=1 
-------------------------------------UAUUGGCAGGGgUUGGAUGUGU------------- l=22 a=1 
--------------------------------------AUUGGCAGGGUUUGGAUGUGUA------------ l=22 a=1 
---------------------------------------UUGGCAGGGUUUGGAUGUGUAUCU--------- l=24 a=5 (ma)
---------------------------------------UUGGCAGGGUUUGGAUGUGUAUCa--------- l=24 a=1 
----------------------------------------UGGCAGGGUUUGGAUGUGUAUCU--------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111111001100
fn-101
